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Matt 7f9b7b3f0e Add ESMFold (#19977) 
* initial commit

* First draft that gets outputs without crashing!

* Add all the ported openfold dependencies

* testing

* Restructure config files for ESMFold

* Debugging to find output discrepancies

* Mainly style

* Make model runnable without extra deps

* Remove utils and merge them to the modeling file

* Use correct gelu and remove some debug prints

* More cleanup

* Update esm docs

* Update conversion script to support ESMFold properly

* Port some top-level changes from ESMFold repo

* Expand EsmFold docstrings

* Make attention_mask optional (default to all 1s)

* Add inference test for ESMFold

* Use config and not n kwargs

* Add modeling output class

* Remove einops

* Remove chunking in ESM FFN

* Update tests for ESMFold

* Quality

* REpo consistency

* Remove tree dependency from ESMFold

* make fixup

* Add an error in case my structure map function breaks later

* Remove needless code

* Stop auto-casting the LM to float16 so CPU tests pass

* Stop auto-casting the LM to float16 so CPU tests pass

* Final test updates

* Split test file

* Copyright and quality

* Unpin PyTorch to see built doc

* Fix config file to_dict() method

* Add some docstrings to the output

* Skip TF checkpoint tests for ESM until we reupload those

* make fixup

* More docstrings

* Unpin to get even with main

* Flag example to write

Co-authored-by: Sylvain Gugger <Sylvain.gugger@gmail.com>
2022-10-31 21:32:58 -04:00
..
albert.mdx
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auto.mdx
Add depth estimation pipeline (#18618)
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bart.mdx
add resources for bart (#19928)
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barthez.mdx
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bartpho.mdx
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beit.mdx
Beit postprocessing (#19099)
2022-09-20 10:41:56 +03:00
bert-generation.mdx
Result of new doc style with fixes (#17015)
2022-04-29 17:42:15 -04:00
bert-japanese.mdx
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bert.mdx
Add a TF in-graph tokenizer for BERT (#17701)
2022-06-27 12:06:21 +01:00
bertweet.mdx
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2022-04-04 10:25:46 -04:00
big_bird.mdx
[FlaxBert] Add ForCausalLM (#16995)
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bigbird_pegasus.mdx
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blenderbot-small.mdx
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blenderbot.mdx
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bloom.mdx
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bort.mdx
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byt5.mdx
[Doctests] Fix all T5 doc tests (#16646)
2022-04-13 11:36:54 +02:00
camembert.mdx
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canine.mdx
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clip.mdx
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codegen.mdx
Add CodeGen model (#17443)
2022-06-24 17:10:38 +02:00
conditional_detr.mdx
[Conditional, Deformable DETR] Add postprocessing methods (#19709)
2022-10-31 08:28:44 +01:00
convbert.mdx
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convnext.mdx
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cpm.mdx
Allow all imports from transformers (#17050)
2022-05-02 12:47:39 -04:00
ctrl.mdx
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cvt.mdx
[CvT] Tensorflow implementation (#18597)
2022-10-11 18:16:52 +01:00
data2vec.mdx
Add TFData2VecVision for semantic segmentation (#17271)
2022-06-08 14:03:18 +01:00
deberta-v2.mdx
Add DebertaV2ForMultipleChoice (#17135)
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deberta.mdx
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decision_transformer.mdx
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deformable_detr.mdx
[Conditional, Deformable DETR] Add postprocessing methods (#19709)
2022-10-31 08:28:44 +01:00
deit.mdx
Add TF DeiT implementation (#17806)
2022-07-13 18:04:08 +01:00
detr.mdx
fix docs example, add object_detection to DETR docs (#19377)
2022-10-07 00:02:26 +02:00
dialogpt.mdx
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distilbert.mdx
add resources for distilbert (#19930)
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dit.mdx
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donut.mdx
Fix URLs (#18604)
2022-08-12 18:52:49 +02:00
dpr.mdx
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dpt.mdx
Add post_process_semantic_segmentation method to DPTFeatureExtractor (#19107)
2022-09-21 15:15:26 +03:00
electra.mdx
[FlaxBert] Add ForCausalLM (#16995)
2022-05-03 11:26:19 +02:00
encoder-decoder.mdx
[EncoderDecoder] Improve docs (#18271)
2022-07-27 10:08:59 +02:00
ernie.mdx
add task_type_id to BERT to support ERNIE-2.0 and ERNIE-3.0 models (#18686)
2022-09-09 07:36:46 -04:00
esm.mdx
Add ESMFold (#19977)
2022-10-31 21:32:58 -04:00
flan-t5.mdx
Add flan-t5 documentation page (#19892)
2022-10-26 17:22:57 +02:00
flaubert.mdx
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flava.mdx
[feat] Add FLAVA model (#16654)
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fnet.mdx
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fsmt.mdx
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funnel.mdx
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glpn.mdx
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gpt2.mdx
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gpt_neo.mdx
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gpt_neox_japanese.mdx
Add support for Japanese GPT-NeoX-based model by ABEJA, Inc. (#18814)
2022-09-14 10:17:40 -04:00
gpt_neox.mdx
[WIP] Adding GPT-NeoX-20B (#16659)
2022-05-24 09:31:10 -04:00
gptj.mdx
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groupvit.mdx
[TensorFlow] Adding GroupViT (#18020)
2022-09-29 10:48:04 +01:00
herbert.mdx
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hubert.mdx
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ibert.mdx
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imagegpt.mdx
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layoutlm.mdx
[LayoutLM] Add clarification to docs (#18716)
2022-09-02 14:48:19 +02:00
layoutlmv2.mdx
Correct & Improve Doctests for LayoutLMv2 (#17168)
2022-05-23 08:02:31 -04:00
layoutlmv3.mdx
[LayoutLMv3] Add TensorFlow implementation (#18678)
2022-08-30 11:48:11 +01:00
layoutxlm.mdx
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led.mdx
[LED] fix global_attention_mask not being passed for generation and docs clarification about grad checkpointing (#17112)
2022-05-17 23:44:37 +02:00
levit.mdx
Adding LeViT Model by Facebook (#17466)
2022-06-01 17:06:20 +02:00
lilt.mdx
Add docs (#19729)
2022-10-18 17:42:46 +02:00
longformer.mdx
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longt5.mdx
Update longt5.mdx (#18634)
2022-08-16 10:20:46 -05:00
luke.mdx
Adding fine-tuning models to LUKE (#18353)
2022-08-01 11:09:47 -04:00
lxmert.mdx
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m2m_100.mdx
Fix m2m_100.mdx doc example missing labels (#19149)
2022-09-29 13:27:58 +02:00
marian.mdx
Replace as_target context managers by direct calls (#18325)
2022-07-29 08:09:09 -04:00
markuplm.mdx
Fix doctest for MarkupLM (#19845)
2022-10-24 17:54:23 +02:00
maskformer.mdx
Maskformer post-processing fixes and improvements (#19172)
2022-10-05 15:27:15 +03:00
mbart.mdx
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2022-07-29 08:09:09 -04:00
mctct.mdx
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megatron_gpt2.mdx
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megatron-bert.mdx
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mluke.mdx
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mobilebert.mdx
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mobilevit.mdx
Add semantic segmentation post-processing method to MobileViT (#19105)
2022-09-23 16:24:28 +03:00
mpnet.mdx
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mt5.mdx
Flax t5 Encoder (#17784)
2022-06-30 00:49:02 +02:00
mvp.mdx
Add MVP model (#17787)
2022-06-29 09:30:55 -04:00
nezha.mdx
Nezha Pytorch implementation (#17776)
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nllb.mdx
Replace as_target context managers by direct calls (#18325)
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nystromformer.mdx
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openai-gpt.mdx
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opt.mdx
Add OPTForQuestionAnswering (#19402)
2022-10-10 09:30:59 -04:00
owlvit.mdx
fix owlvit tests, update docstring examples (#18586)
2022-08-11 19:10:25 +03:00
pegasus_x.mdx
PEGASUS-X (#18551)
2022-09-02 19:54:02 +02:00
pegasus.mdx
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perceiver.mdx
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phobert.mdx
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plbart.mdx
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poolformer.mdx
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prophetnet.mdx
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qdqbert.mdx
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rag.mdx
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realm.mdx
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reformer.mdx
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regnet.mdx
TF implementation of RegNets (#17554)
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rembert.mdx
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resnet.mdx
Add TF ResNet model (#17427)
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retribert.mdx
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roberta.mdx
Add RoBERTa resources (#19911)
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roformer.mdx
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segformer.mdx
Add post_process_semantic_segmentation method to SegFormer (#19072)
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sew-d.mdx
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sew.mdx
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speech_to_text_2.mdx
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speech_to_text.mdx
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speech-encoder-decoder.mdx
Replace as_target context managers by direct calls (#18325)
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splinter.mdx
Add support for pretraining recurring span selection to Splinter (#17247)
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squeezebert.mdx
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swin.mdx
Add Tensorflow Swin model (#16988)
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swinv2.mdx
Add swin transformer v2 (#17469)
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t5.mdx
Add T5 resources (#19878)
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t5v1.1.mdx
[Doctests] Fix all T5 doc tests (#16646)
2022-04-13 11:36:54 +02:00
table-transformer.mdx
Add docs (#19729)
2022-10-18 17:42:46 +02:00
tapas.mdx
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tapex.mdx
Add TAPEX (#16473)
2022-04-08 10:57:51 +02:00
time_series_transformer.mdx
time series forecasting model (#17965)
2022-09-30 15:32:59 -04:00
trajectory_transformer.mdx
Add trajectory transformer (#17141)
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transfo-xl.mdx
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trocr.mdx
Replace as_target context managers by direct calls (#18325)
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ul2.mdx
Add UL2 (just docs) (#17740)
2022-06-21 10:24:50 +02:00
unispeech-sat.mdx
Add Wav2Vec2Conformer (#16812)
2022-05-17 00:43:16 +02:00
unispeech.mdx
Add Wav2Vec2Conformer (#16812)
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van.mdx
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videomae.mdx
Add VideoMAE (#17821)
2022-08-04 18:02:55 +02:00
vilt.mdx
[Past CI] Vilt only supports PT >= v1.10 (#19851)
2022-10-25 15:59:35 +02:00
vision-encoder-decoder.mdx
[EncoderDecoder] Improve docs (#18271)
2022-07-27 10:08:59 +02:00
vision-text-dual-encoder.mdx
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visual_bert.mdx
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vit_mae.mdx
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vit_msn.mdx
MSN (Masked Siamese Networks) for ViT (#18815)
2022-09-22 07:15:03 -04:00
vit.mdx
Improve vision models docs (#19103)
2022-09-19 19:22:34 +02:00
wav2vec2_phoneme.mdx
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wav2vec2-conformer.mdx
[Wav2Vec2Conformer] Official release (#17709)
2022-06-15 18:34:15 +02:00
wav2vec2.mdx
Add wav2vec2 resources (#19931)
2022-10-28 13:28:18 -07:00
wavlm.mdx
Add Wav2Vec2Conformer (#16812)
2022-05-17 00:43:16 +02:00
whisper.mdx
add a note to whisper docs clarifying support of long-form decoding (#19497)
2022-10-13 10:39:03 +02:00
xclip.mdx
Improve vision models docs (#19103)
2022-09-19 19:22:34 +02:00
xglm.mdx
Add TF implementation of XGLMModel (#16543)
2022-08-24 10:51:05 +01:00
xlm-prophetnet.mdx
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xlm-roberta-xl.mdx
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xlm-roberta.mdx
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xlm.mdx
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xlnet.mdx
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xls_r.mdx
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xlsr_wav2vec2.mdx
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yolos.mdx
Fix docs (#19687)
2022-10-18 09:52:51 +02:00
yoso.mdx
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