* [FT] First commit for graphormer architecture.
The model has no tokenizer, as it uses a collator and preprocessing function for its input management.
Architecture to be tested against original one.
The arch might need to be changed to fit the checkpoint, but a revert to the original arch will make the code less nice to read.
TODO: doc
* [FIX] removed test model
* [FIX] import error
* [FIX] black and flake
* [DOC] added paper refs
* [FIX] [DOC]
* [FIX] black
* [DOC] Updated READMEs
* [FIX] Order of imports + rm Tokenizer calls
* [FIX] Moved assert in class to prevent doc build failure
* [FIX] make fix-copies
* [Doc] update from code review
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* [FIX] Removed Graphormer from Sequence classification model list
* [DOC] Added HF copyright to Cython file
* [DOC] Fixed comments
* [FIX] typos in class doc + removed config classes.
Todo: update doc from paper definitions
* [FIX] Removed dependency to fairseq, and replaced all asserts with Exception management
* [FIX] Homogeneized initialization of weights to pretrained constructor
* [FIX] [CP] Updated multi_hop parameter to get same results as in original implementation
* [DOC] Relevant parameter description in the configuration file
* [DOC] Updated doc and comments in main graphormer file
* [FIX] make style and quality checks
* [DOC] Fix doc format
* [FIX] [WIP] Updated part of the tests, though still a wip
* [FIX] [WIP]
* [FIX] repo consistency
* [FIX] Changed input names for more understandability
* [FIX] [BUG] updated num_classes params for propagation in the model
* simplified collator
* [FIX] Updated tests to follow new naming pattern
* [TESTS] Updated test suite along with model
* |FIX] rm tokenizer import
* [DOC] add link to graphormerdoc
* Changed section in doc from text model to graph model
* Apply suggestions from code review
Spacing, inits
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* [DOC] Explain algos_graphormer functions
* Cython soft import protection
* Rm call to Callable in configuration graphormer
* [FIX] replaced asserts with Exceptions
* Add org to graphormer checkpoints
* Prefixed classes with Graphormer
* Management of init functions
* format
* fixes
* fix length file
* update indent
* relaunching ci
* Errors for missing cython imports
* fix style
* fix style doc
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
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