[WIP] Lightning glue example (#3290)

* ✨ Alter base pl transformer to use automodels

* 🐛 Add batch size env variable to function call

* 💄 Apply black code style from Makefile

* 🚚 Move lightning base out of ner directory

* ✨ Add lightning glue example

* 💄 self

* move _feature_file to base class

* ✨ Move eval logging to custom callback

* 💄 Apply black code style

* 🐛 Add parent to pythonpath, remove copy command

* 🐛 Add missing max_length kwarg

examples/ner/run_pl_ner.py

@@ -21,11 +21,13 @@ class NERTransformer(BaseTransformer):
     A training module for NER. See BaseTransformer for the core options.
     """
 
+    mode = "token-classification"
+
     def __init__(self, hparams):
         self.labels = get_labels(hparams.labels)
         num_labels = len(self.labels)
         self.pad_token_label_id = CrossEntropyLoss().ignore_index
-        super(NERTransformer, self).__init__(hparams, num_labels)
+        super(NERTransformer, self).__init__(hparams, num_labels, self.mode)
 
     def forward(self, **inputs):
         return self.model(**inputs)
@@ -38,21 +40,11 @@ class NERTransformer(BaseTransformer):
                 batch[2] if self.hparams.model_type in ["bert", "xlnet"] else None
             )  # XLM and RoBERTa don"t use segment_ids
 
-        outputs = self.forward(**inputs)
+        outputs = self(**inputs)
         loss = outputs[0]
         tensorboard_logs = {"loss": loss, "rate": self.lr_scheduler.get_last_lr()[-1]}
         return {"loss": loss, "log": tensorboard_logs}
 
-    def _feature_file(self, mode):
-        return os.path.join(
-            self.hparams.data_dir,
-            "cached_{}_{}_{}".format(
-                mode,
-                list(filter(None, self.hparams.model_name_or_path.split("/"))).pop(),
-                str(self.hparams.max_seq_length),
-            ),
-        )
-
     def prepare_data(self):
         "Called to initialize data. Use the call to construct features"
         args = self.hparams
@@ -100,7 +92,7 @@ class NERTransformer(BaseTransformer):
             inputs["token_type_ids"] = (
                 batch[2] if self.hparams.model_type in ["bert", "xlnet"] else None
             )  # XLM and RoBERTa don"t use segment_ids
-        outputs = self.forward(**inputs)
+        outputs = self(**inputs)
         tmp_eval_loss, logits = outputs[:2]
         preds = logits.detach().cpu().numpy()
         out_label_ids = inputs["labels"].detach().cpu().numpy()
@@ -130,14 +122,8 @@ class NERTransformer(BaseTransformer):
             "f1": f1_score(out_label_list, preds_list),
         }
 
-        if self.is_logger():
-            logger.info("***** Eval results *****")
-            for key in sorted(results.keys()):
-                logger.info("  %s = %s", key, str(results[key]))
-
-        tensorboard_logs = results
         ret = {k: v for k, v in results.items()}
-        ret["log"] = tensorboard_logs
+        ret["log"] = results
         return ret, preds_list, out_label_list
 
     def validation_end(self, outputs):
@@ -151,32 +137,7 @@ class NERTransformer(BaseTransformer):
         # updating to test_epoch_end instead of deprecated test_end
         ret, predictions, targets = self._eval_end(outputs)
 
-        if self.is_logger():
-            # Write output to a file:
-            # Save results
-            output_test_results_file = os.path.join(self.hparams.output_dir, "test_results.txt")
-            with open(output_test_results_file, "w") as writer:
-                for key in sorted(ret.keys()):
-                    if key != "log":
-                        writer.write("{} = {}\n".format(key, str(ret[key])))
-            # Save predictions
-            output_test_predictions_file = os.path.join(self.hparams.output_dir, "test_predictions.txt")
-            with open(output_test_predictions_file, "w") as writer:
-                with open(os.path.join(self.hparams.data_dir, "test.txt"), "r") as f:
-                    example_id = 0
-                    for line in f:
-                        if line.startswith("-DOCSTART-") or line == "" or line == "\n":
-                            writer.write(line)
-                            if not predictions[example_id]:
-                                example_id += 1
-                        elif predictions[example_id]:
-                            output_line = line.split()[0] + " " + predictions[example_id].pop(0) + "\n"
-                            writer.write(output_line)
-                        else:
-                            logger.warning(
-                                "Maximum sequence length exceeded: No prediction for '%s'.", line.split()[0]
-                            )
-        # Converting to the dic required by pl
+        # Converting to the dict required by pl
         # https://github.com/PyTorchLightning/pytorch-lightning/blob/master/\
         # pytorch_lightning/trainer/logging.py#L139
         logs = ret["log"]
@@ -230,6 +191,6 @@ if __name__ == "__main__":
         # pl use this format to create a checkpoint:
         # https://github.com/PyTorchLightning/pytorch-lightning/blob/master\
         # /pytorch_lightning/callbacks/model_checkpoint.py#L169
-        checkpoints = list(sorted(glob.glob(args.output_dir + "/checkpointepoch=*.ckpt", recursive=True)))
+        checkpoints = list(sorted(glob.glob(os.path.join(args.output_dir, "checkpointepoch=*.ckpt"), recursive=True)))
         NERTransformer.load_from_checkpoint(checkpoints[-1])
         trainer.test(model)