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Add sdpa for BioGpt (#33592)

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* Add sdpa for BioGpt

* Updates

* Add the docs

* [run_slow] biogpt

* Use the copy mechanism to ensure consistency

* [run_slow] biogpt
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Omar Salman
2024-09-20 18:27:32 +05:00
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parent f9b4409726
commit 653eb40425
3 changed files with 174 additions and 5 deletions
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docs/source/en/model_doc/biogpt.md
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@@ -32,6 +32,51 @@ This model was contributed by [kamalkraj](https://huggingface.co/kamalkraj). The
- BioGPT was trained with a causal language modeling (CLM) objective and is therefore powerful at predicting the next token in a sequence. Leveraging this feature allows BioGPT to generate syntactically coherent text as it can be observed in the run_generation.py example script.
- The model can take the `past_key_values` (for PyTorch) as input, which is the previously computed key/value attention pairs. Using this (past_key_values or past) value prevents the model from re-computing pre-computed values in the context of text generation. For PyTorch, see past_key_values argument of the BioGptForCausalLM.forward() method for more information on its usage.
### Using Scaled Dot Product Attention (SDPA)
PyTorch includes a native scaled dot-product attention (SDPA) operator as part of `torch.nn.functional`. This function
encompasses several implementations that can be applied depending on the inputs and the hardware in use. See the
[official documentation](https://pytorch.org/docs/stable/generated/torch.nn.functional.scaled_dot_product_attention.html)
or the [GPU Inference](https://huggingface.co/docs/transformers/main/en/perf_infer_gpu_one#pytorch-scaled-dot-product-attention)
page for more information.
SDPA is used by default for `torch>=2.1.1` when an implementation is available, but you may also set
`attn_implementation="sdpa"` in `from_pretrained()` to explicitly request SDPA to be used.
```
from transformers import BioGptForCausalLM
model = BioGptForCausalLM.from_pretrained("microsoft/biogpt", attn_implementation="sdpa", torch_dtype=torch.float16)
```
On a local benchmark (NVIDIA GeForce RTX 2060-8GB, PyTorch 2.3.1, OS Ubuntu 20.04) with `float16` and `microsoft/biogpt` model with a CausalLM head,
we saw the following speedups during training.
For the best speedups, we recommend loading the model in half-precision (e.g. `torch.float16` or `torch.bfloat16`).
| num_training_steps | batch_size | seq_len | is cuda | Time per batch (eager - s) | Time per batch (sdpa - s) | Speedup (%) | Eager peak mem (MB) | sdpa peak mem (MB) | Mem saving (%) |
|--------------------|------------|---------|---------|----------------------------|---------------------------|-------------|---------------------|--------------------|----------------|
| 100 | 1 | 128 | False | 0.038 | 0.031 | 21.301 | 1601.862 | 1601.497 | 0.023 |
| 100 | 1 | 256 | False | 0.039 | 0.034 | 15.084 | 1624.944 | 1625.296 | -0.022 |
| 100 | 2 | 128 | False | 0.039 | 0.033 | 16.820 | 1624.567 | 1625.296 | -0.045 |
| 100 | 2 | 256 | False | 0.065 | 0.059 | 10.255 | 1672.164 | 1672.164 | 0.000 |
| 100 | 4 | 128 | False | 0.062 | 0.058 | 6.998 | 1671.435 | 1672.164 | -0.044 |
| 100 | 4 | 256 | False | 0.113 | 0.100 | 13.316 | 2350.179 | 1848.435 | 27.144 |
| 100 | 8 | 128 | False | 0.107 | 0.098 | 9.883 | 2098.521 | 1848.435 | 13.530 |
| 100 | 8 | 256 | False | 0.222 | 0.196 | 13.413 | 3989.980 | 2986.492 | 33.601 |
On a local benchmark (NVIDIA GeForce RTX 2060-8GB, PyTorch 2.3.1, OS Ubuntu 20.04) with `float16` and `microsoft/biogpt` model with a simple AutoModel head,
we saw the following speedups during inference.
| num_batches | batch_size | seq_len | is cuda | is half | use mask | Per token latency eager (ms) | Per token latency SDPA (ms) | Speedup (%) | Mem eager (MB) | Mem BT (MB) | Mem saved (%) |
|-------------|------------|---------|---------|---------|----------|------------------------------|-----------------------------|-------------|----------------|--------------|---------------|
| 50 | 1 | 64 | True | True | True | 0.115 | 0.098 | 17.392 | 716.998 | 716.998 | 0.000 |
| 50 | 1 | 128 | True | True | True | 0.115 | 0.093 | 24.640 | 730.916 | 730.916 | 0.000 |
| 50 | 2 | 64 | True | True | True | 0.114 | 0.096 | 19.204 | 730.900 | 730.900 | 0.000 |
| 50 | 2 | 128 | True | True | True | 0.117 | 0.095 | 23.529 | 759.262 | 759.262 | 0.000 |
| 50 | 4 | 64 | True | True | True | 0.113 | 0.096 | 18.325 | 759.229 | 759.229 | 0.000 |
| 50 | 4 | 128 | True | True | True | 0.186 | 0.178 | 4.289 | 816.478 | 816.478 | 0.000 |
## Resources
- [Causal language modeling task guide](../tasks/language_modeling)

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docs/source/en/perf_infer_gpu_one.md
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@@ -208,6 +208,7 @@ For now, Transformers supports SDPA inference and training for the following arc
* [Audio Spectrogram Transformer](https://huggingface.co/docs/transformers/model_doc/audio-spectrogram-transformer#transformers.ASTModel)
* [Bart](https://huggingface.co/docs/transformers/model_doc/bart#transformers.BartModel)
* [Bert](https://huggingface.co/docs/transformers/model_doc/bert#transformers.BertModel)
* [BioGpt](https://huggingface.co/docs/transformers/model_doc/biogpt#transformers.BioGptModel)
* [CamemBERT](https://huggingface.co/docs/transformers/model_doc/camembert#transformers.CamembertModel)
* [Chameleon](https://huggingface.co/docs/transformers/model_doc/chameleon#transformers.Chameleon)
* [CLIP](https://huggingface.co/docs/transformers/model_doc/clip#transformers.CLIPModel)